No. words: 1575; after pruning: 1535


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.8 (1,1:968)  560  0.83 0.00 0.17  KSU039_A05_BE497224Ld01P009C03C091F2_047.ab1       86   691 (0)  C KSU039_A11_BE497224Ld01P009C03C091R2_095.ab1   (0)   884   280 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  288 nodes

 146 str. conn. components

Path
    1    KSU039_A05_BE497224Ld01P009C03C091F2_047.ab1     1 
  445  C KSU039_A11_BE497224Ld01P009C03C091R2_095.ab1   525 
  457    KSU039_A05_BE497224Ld01P009C03C091F2_047.ab1   457 
  461  C KSU039_A11_BE497224Ld01P009C03C091R2_095.ab1   509 
Contig length: old 969, new 969

Contig length: old 969, new 969
New start: 0