No. words: 1513; after pruning: 1473


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 11.5 (1,1:958)  517  1.26 0.00 0.00  KSU039_B05_BE497224Ld02P009C03C091F2_045.ab1      159   712 (0)  C KSU039_B11_BE497224Ld02P009C03C091R2_093.ab1   (0)   801   248 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  262 nodes

 133 str. conn. components

Path
    1    KSU039_B05_BE497224Ld02P009C03C091F2_045.ab1     1 
  359  C KSU039_B11_BE497224Ld02P009C03C091R2_093.ab1   601 
  363    KSU039_B05_BE497224Ld02P009C03C091F2_045.ab1   363 
  399  C KSU039_B11_BE497224Ld02P009C03C091R2_093.ab1   561 
  403    KSU039_B05_BE497224Ld02P009C03C091F2_045.ab1   403 
  423  C KSU039_B11_BE497224Ld02P009C03C091R2_093.ab1   537 
Contig length: old 959, new 959

Contig length: old 959, new 959
New start: 0