No. words: 1337; after pruning: 1311


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 7.1 (1,1:967)  350  0.27 0.00 0.27  KSU039_C05_BE497224Ld03P009C03C091F2_043.ab1      166   535 (0)  C KSU039_C11_BE497224Ld03P009C03C091R2_091.ab1   (0)   802   434 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  176 nodes

 90 str. conn. components

Path
    1    KSU039_C05_BE497224Ld03P009C03C091F2_043.ab1     1 
  316  C KSU039_C11_BE497224Ld03P009C03C091R2_091.ab1   653 
  320    KSU039_C05_BE497224Ld03P009C03C091F2_043.ab1   320 
  328  C KSU039_C11_BE497224Ld03P009C03C091R2_091.ab1   641 
  332    KSU039_C05_BE497224Ld03P009C03C091F2_043.ab1   332 
  348  C KSU039_C11_BE497224Ld03P009C03C091R2_091.ab1   621 
Contig length: old 968, new 968

Contig length: old 968, new 968
New start: 0