No. words: 1075; after pruning: 1035


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 2.3 (1,1:966)   97  1.85 0.00 0.00  KSU039_D05_BE497224Ld04P009C03C091F2_041.ab1      131   238 (0)  C KSU039_D11_BE497224Ld04P009C03C091R2_089.ab1   (0)   837   730 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  52 nodes

 28 str. conn. components

Path
    1    KSU039_D05_BE497224Ld04P009C03C091F2_041.ab1     1 
  206  C KSU039_D11_BE497224Ld04P009C03C091R2_089.ab1   762 
  218    KSU039_D05_BE497224Ld04P009C03C091F2_041.ab1   218 
  222  C KSU039_D11_BE497224Ld04P009C03C091R2_089.ab1   746 
Contig length: old 967, new 967

Contig length: old 967, new 967
New start: 0 
S Change at: 228; seg lengths: entry 2, contig 2