No. words: 1136; after pruning: 1110


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 3.6 (1,1:970)  161  0.00 0.00 0.00  KSU039_E05_BE497224Ld05P009C03C091F2_039.ab1      167   331 (0)  C KSU039_E11_BE497224Ld05P009C03C091R2_087.ab1   (0)   805   641 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  84 nodes

 44 str. conn. components

Path
    1    KSU039_E05_BE497224Ld05P009C03C091F2_039.ab1     1 
  230  C KSU039_E11_BE497224Ld05P009C03C091R2_087.ab1   742 
  238    KSU039_E05_BE497224Ld05P009C03C091F2_039.ab1   238 
  270  C KSU039_E11_BE497224Ld05P009C03C091R2_087.ab1   702 
  282    KSU039_E05_BE497224Ld05P009C03C091F2_039.ab1   282 
  286  C KSU039_E11_BE497224Ld05P009C03C091R2_087.ab1   686 
  290    KSU039_E05_BE497224Ld05P009C03C091F2_039.ab1   290 
  294  C KSU039_E11_BE497224Ld05P009C03C091R2_087.ab1   678 
  310    KSU039_E05_BE497224Ld05P009C03C091F2_039.ab1   310 
  314  C KSU039_E11_BE497224Ld05P009C03C091R2_087.ab1   658 
Contig length: old 971, new 971

Contig length: old 971, new 971
New start: 0