No. words: 1006; after pruning: 980


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 0.3 (1,1:967)   25  0.00 0.00 5.13  KSU039_F05_BE497224Ld06P009C03C091F2_037.ab1      175   213 (0)  C KSU039_F11_BE497224Ld06P009C03C091R2_085.ab1   (0)   793   757 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  14 nodes

 9 str. conn. components

Path
    1    KSU039_F05_BE497224Ld06P009C03C091F2_037.ab1     1 
  188  C KSU039_F11_BE497224Ld06P009C03C091R2_085.ab1   781 
Contig length: old 968, new 968

Contig length: old 968, new 968
New start: 0