No. words: 1297; after pruning: 1271


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 5.0 (1,1:965)  306  0.60 0.30 0.30  KSU039_G05_BE497224Ld07P009C03C091F2_035.ab1      214   544 (0)  C KSU039_G11_BE497224Ld07P009C03C091R2_083.ab1   (0)   753   423 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  154 nodes

 79 str. conn. components

Path
    1    KSU039_G05_BE497224Ld07P009C03C091F2_035.ab1     1 
  229  C KSU039_G11_BE497224Ld07P009C03C091R2_083.ab1   738 
  233    KSU039_G05_BE497224Ld07P009C03C091F2_035.ab1   233 
  340  C KSU039_G11_BE497224Ld07P009C03C091R2_083.ab1   627 
  352    KSU039_G05_BE497224Ld07P009C03C091F2_035.ab1   352 
  360  C KSU039_G11_BE497224Ld07P009C03C091R2_083.ab1   607 
  372    KSU039_G05_BE497224Ld07P009C03C091F2_035.ab1   372 
  376  C KSU039_G11_BE497224Ld07P009C03C091R2_083.ab1   591 
Contig length: old 966, new 966

Contig length: old 966, new 966
New start: 0