No. words: 1431; after pruning: 1391


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 8.9 (1,1:963)  427  0.86 0.00 0.43  KSU039_B06_BE497224Ld10P009C03C091F2_046.ab1       82   548 (0)  C KSU039_B12_BE497224Ld10P009C03C091R2_094.ab1   (0)   883   419 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  220 nodes

 112 str. conn. components

Path
    1    KSU039_B06_BE497224Ld10P009C03C091F2_046.ab1     1 
  345  C KSU039_B12_BE497224Ld10P009C03C091R2_094.ab1   620 
  349    KSU039_B06_BE497224Ld10P009C03C091F2_046.ab1   349 
  369  C KSU039_B12_BE497224Ld10P009C03C091R2_094.ab1   596 
  373    KSU039_B06_BE497224Ld10P009C03C091F2_046.ab1   373 
  381  C KSU039_B12_BE497224Ld10P009C03C091R2_094.ab1   584 
  389    KSU039_B06_BE497224Ld10P009C03C091F2_046.ab1   389 
  397  C KSU039_B12_BE497224Ld10P009C03C091R2_094.ab1   568 
  409    KSU039_B06_BE497224Ld10P009C03C091F2_046.ab1   409 
  413  C KSU039_B12_BE497224Ld10P009C03C091R2_094.ab1   552 
Contig length: old 964, new 964

Contig length: old 964, new 964
New start: 0