No. words: 1374; after pruning: 1334


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 8.1 (1,1:962)  392  0.49 0.00 0.00  KSU039_D06_BE497224Ld12P009C03C091F2_042.ab1        8   417 (0)  C KSU039_D12_BE497224Ld12P009C03C091R2_090.ab1   (1)   956   547 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  200 nodes

 102 str. conn. components

Path
    1    KSU039_D06_BE497224Ld12P009C03C091F2_042.ab1     1 
  261  C KSU039_D12_BE497224Ld12P009C03C091R2_090.ab1   703 
  265    KSU039_D06_BE497224Ld12P009C03C091F2_042.ab1   265 
  301  C KSU039_D12_BE497224Ld12P009C03C091R2_090.ab1   663 
  305    KSU039_D06_BE497224Ld12P009C03C091F2_042.ab1   305 
  313  C KSU039_D12_BE497224Ld12P009C03C091R2_090.ab1   651 
  333    KSU039_D06_BE497224Ld12P009C03C091F2_042.ab1   333 
  337  C KSU039_D12_BE497224Ld12P009C03C091R2_090.ab1   627 
Contig length: old 963, new 963

Contig length: old 963, new 963
New start: 0