No. words: 1272; after pruning: 1246


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 5.9 (1,1:966)  282  1.31 0.00 0.00  KSU039_E06_BE497224Ld13P009C03C091F2_040.ab1      163   467 (0)  C KSU039_E12_BE497224Ld13P009C03C091R2_088.ab1   (0)   805   501 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  142 nodes

 73 str. conn. components

Path
    1    KSU039_E06_BE497224Ld13P009C03C091F2_040.ab1     1 
  262  C KSU039_E12_BE497224Ld13P009C03C091R2_088.ab1   706 
  266    KSU039_E06_BE497224Ld13P009C03C091F2_040.ab1   266 
  274  C KSU039_E12_BE497224Ld13P009C03C091R2_088.ab1   694 
  278    KSU039_E06_BE497224Ld13P009C03C091F2_040.ab1   278 
  294  C KSU039_E12_BE497224Ld13P009C03C091R2_088.ab1   674 
  298    KSU039_E06_BE497224Ld13P009C03C091F2_040.ab1   298 
  310  C KSU039_E12_BE497224Ld13P009C03C091R2_088.ab1   658 
  314    KSU039_E06_BE497224Ld13P009C03C091F2_040.ab1   314 
  318  C KSU039_E12_BE497224Ld13P009C03C091R2_088.ab1   650 
  330    KSU039_E06_BE497224Ld13P009C03C091F2_040.ab1   330 
  338  C KSU039_E12_BE497224Ld13P009C03C091R2_088.ab1   630 
Contig length: old 967, new 967

Contig length: old 967, new 967
New start: 0