No. words: 1287; after pruning: 1261


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 6.8 (1,1:967)  306  0.31 0.00 0.00  KSU039_F06_BE497224Ld14P009C03C091F2_038.ab1      164   482 (0)  C KSU039_F12_BE497224Ld14P009C03C091R2_086.ab1   (0)   805   487 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  158 nodes

 81 str. conn. components

Path
    1    KSU039_F06_BE497224Ld14P009C03C091F2_038.ab1     1 
  339  C KSU039_F12_BE497224Ld14P009C03C091R2_086.ab1   630 
  343    KSU039_F06_BE497224Ld14P009C03C091F2_038.ab1   343 
  347  C KSU039_F12_BE497224Ld14P009C03C091R2_086.ab1   622 
  355    KSU039_F06_BE497224Ld14P009C03C091F2_038.ab1   355 
  363  C KSU039_F12_BE497224Ld14P009C03C091R2_086.ab1   606 
  367    KSU039_F06_BE497224Ld14P009C03C091F2_038.ab1   367 
  371  C KSU039_F12_BE497224Ld14P009C03C091R2_086.ab1   598 
  375    KSU039_F06_BE497224Ld14P009C03C091F2_038.ab1   375 
  379  C KSU039_F12_BE497224Ld14P009C03C091R2_086.ab1   590 
Contig length: old 968, new 968

Contig length: old 968, new 968
New start: 0