No. words: 1489; after pruning: 1463


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.1 (1,1:1002)  465  0.41 0.00 0.00  KSU006_F11_BE497224Tu01P009C03C091F1_091.ab1      262   747 (0)  C KSU007_F11_BE497224Tu01P009C03C091R1_091.ab1   (0)   742   257 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  238 nodes

 121 str. conn. components

Path
    1    KSU006_F11_BE497224Tu01P009C03C091F1_091.ab1     1 
  462  C KSU007_F11_BE497224Tu01P009C03C091R1_091.ab1   542 
  466    KSU006_F11_BE497224Tu01P009C03C091F1_091.ab1   466 
  478  C KSU007_F11_BE497224Tu01P009C03C091R1_091.ab1   526 
  486    KSU006_F11_BE497224Tu01P009C03C091F1_091.ab1   486 
  490  C KSU007_F11_BE497224Tu01P009C03C091R1_091.ab1   514 
  514    KSU006_F11_BE497224Tu01P009C03C091F1_091.ab1   514 
  518  C KSU007_F11_BE497224Tu01P009C03C091R1_091.ab1   486 
  546    KSU006_F11_BE497224Tu01P009C03C091F1_091.ab1   546 
  550  C KSU007_F11_BE497224Tu01P009C03C091R1_091.ab1   454 
Contig length: old 1003, new 1003

Contig length: old 1003, new 1003
New start: 0