No. words: 1940; after pruning: 1914


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    2    0.0 18.2 (1,1:965)  902  0.21 0.00 0.11  KSU050_C03_BE497224Tu02P009C03C091F1_027.ab1        3   941 (0)  C KSU051_C03_BE497224Tu02P009C03C091R1_027.ab1   (36)   963    26 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 2       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  464 nodes

 234 str. conn. components

Path
    1  C KSU051_C03_BE497224Tu02P009C03C091R1_027.ab1   999 
   40    KSU050_C03_BE497224Tu02P009C03C091F1_027.ab1     6 
  679  C KSU051_C03_BE497224Tu02P009C03C091R1_027.ab1   321 
Contig length: old 999, new 999

Contig length: old 999, new 999
New start: 0