No. words: 1503; after pruning: 1477


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 1.9 (1,1:820)  575  4.55 0.00 0.00  KSU006_H06_BE497309As01P009D03D091F1_048.ab1      117   798 (0)  C KSU007_H06_BE497309As01P009D03D091R1_048.ab1   (0)   705    24 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  266 nodes

 135 str. conn. components

Path
    1    KSU006_H06_BE497309As01P009D03D091F1_048.ab1     1 
  720  C KSU007_H06_BE497309As01P009D03D091R1_048.ab1   102 
  724    KSU006_H06_BE497309As01P009D03D091F1_048.ab1   724 
  735  C KSU007_H06_BE497309As01P009D03D091R1_048.ab1    87 
  739    KSU006_H06_BE497309As01P009D03D091F1_048.ab1   739 
  761  C KSU007_H06_BE497309As01P009D03D091R1_048.ab1    61 
  765    KSU006_H06_BE497309As01P009D03D091F1_048.ab1   765 
  792  C KSU007_H06_BE497309As01P009D03D091R1_048.ab1    30 
Contig length: old 821, new 821

Contig length: old 821, new 821
New start: 0