No. words: 1597; after pruning: 1571


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 12.1 (1,1:1011)  565  0.34 0.00 0.00  KSU002_E10_BE497402At02P006E03E091F1_071.ab1      219   803 (0)  C KSU003_E10_BE497402At02P006E03E091R1_071.ab1   (0)   794   210 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  288 nodes

 146 str. conn. components

Path
    1    KSU002_E10_BE497402At02P006E03E091F1_071.ab1     1 
  682  C KSU003_E10_BE497402At02P006E03E091R1_071.ab1   331 
Contig length: old 1012, new 1012

Contig length: old 1012, new 1012
New start: 0