No. words: 1401; after pruning: 1361


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 8.3 (1,1:958)  418  0.23 0.23 0.23  KSU012_C11_BE497402Ld03P006E03E091F1_091.ab1      220   661 (0)  C KSU013_C11_BE497402Ld03P006E03E091R1_091.ab1   (0)   740   299 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  216 nodes

 110 str. conn. components

Path
    1    KSU012_C11_BE497402Ld03P006E03E091F1_091.ab1     1 
  493  C KSU013_C11_BE497402Ld03P006E03E091R1_091.ab1   467 
Contig length: old 959, new 959

Contig length: old 959, new 959
New start: 0