No. words: 1492; after pruning: 1452


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.9 (1,1:960)  509  0.38 0.19 0.00  KSU012_E11_BE497402Ld05P006E03E091F1_087.ab1      158   687 (0)  C KSU013_E11_BE497402Ld05P006E03E091R1_087.ab1   (0)   805   275 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  258 nodes

 131 str. conn. components

Path
    1    KSU012_E11_BE497402Ld05P006E03E091F1_087.ab1     1 
  487  C KSU013_E11_BE497402Ld05P006E03E091R1_087.ab1   476 
Contig length: old 961, new 962

Contig length: old 962, new 962
New start: 0