No. words: 1202; after pruning: 1176


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 5.2 (1,1:947)  238  0.79 0.00 0.00  KSU012_G11_BE497402Ld07P006E03E091F1_083.ab1      389   642 (0)  C KSU013_G11_BE497402Ld07P006E03E091R1_083.ab1   (0)   560   307 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  124 nodes

 64 str. conn. components

Path
    1    KSU012_G11_BE497402Ld07P006E03E091F1_083.ab1     1 
  494  C KSU013_G11_BE497402Ld07P006E03E091R1_083.ab1   455 
  502    KSU012_G11_BE497402Ld07P006E03E091F1_083.ab1   502 
  526  C KSU013_G11_BE497402Ld07P006E03E091R1_083.ab1   423 
  534    KSU012_G11_BE497402Ld07P006E03E091F1_083.ab1   534 
  542  C KSU013_G11_BE497402Ld07P006E03E091R1_083.ab1   407 
  546    KSU012_G11_BE497402Ld07P006E03E091F1_083.ab1   546 
  558  C KSU013_G11_BE497402Ld07P006E03E091R1_083.ab1   391 
  562    KSU012_G11_BE497402Ld07P006E03E091F1_083.ab1   562 
  566  C KSU013_G11_BE497402Ld07P006E03E091R1_083.ab1   383 
  570    KSU012_G11_BE497402Ld07P006E03E091F1_083.ab1   570 
  578  C KSU013_G11_BE497402Ld07P006E03E091R1_083.ab1   371 
  586    KSU012_G11_BE497402Ld07P006E03E091F1_083.ab1   586 
  590  C KSU013_G11_BE497402Ld07P006E03E091R1_083.ab1   359 
  598    KSU012_G11_BE497402Ld07P006E03E091F1_083.ab1   598 
  602  C KSU013_G11_BE497402Ld07P006E03E091R1_083.ab1   347 
  614    KSU012_G11_BE497402Ld07P006E03E091F1_083.ab1   614 
  618  C KSU013_G11_BE497402Ld07P006E03E091R1_083.ab1   331 
  630    KSU012_G11_BE497402Ld07P006E03E091F1_083.ab1   630 
  638  C KSU013_G11_BE497402Ld07P006E03E091R1_083.ab1   311 
Contig length: old 948, new 948

Contig length: old 948, new 948
New start: 0