No. words: 1326; after pruning: 1300


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 8.1 (1,1:961)  352  0.00 0.00 0.00  KSU012_E12_BE497402Ld13P006E03E091F1_088.ab1      289   652 (0)  C KSU013_E12_BE497402Ld13P006E03E091R1_088.ab1   (0)   674   311 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  182 nodes

 93 str. conn. components

Path
    1    KSU012_E12_BE497402Ld13P006E03E091F1_088.ab1     1 
  492  C KSU013_E12_BE497402Ld13P006E03E091R1_088.ab1   471 
Contig length: old 962, new 962

Contig length: old 962, new 962
New start: 0