No. words: 1579; after pruning: 1539


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 13.6 (1,1:963)  597  0.16 0.00 0.00  KSU002_D06_BE497402Tu01P006E03E091F1_046.ab1      170   784 (0)  C KSU003_D06_BE497402Tu01P006E03E091R1_046.ab1   (0)   795   181 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  306 nodes

 155 str. conn. components

Path
    1    KSU002_D06_BE497402Tu01P006E03E091F1_046.ab1     1 
  431  C KSU003_D06_BE497402Tu01P006E03E091R1_046.ab1   534 
  439    KSU002_D06_BE497402Tu01P006E03E091F1_046.ab1   439 
  451  C KSU003_D06_BE497402Tu01P006E03E091R1_046.ab1   514 
  455    KSU002_D06_BE497402Tu01P006E03E091F1_046.ab1   455 
  459  C KSU003_D06_BE497402Tu01P006E03E091R1_046.ab1   506 
  603    KSU002_D06_BE497402Tu01P006E03E091F1_046.ab1   603 
  607  C KSU003_D06_BE497402Tu01P006E03E091R1_046.ab1   358 
Contig length: old 964, new 964

Contig length: old 964, new 964
New start: 0