No. words: 1610; after pruning: 1570


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 12.6 (1,1:1015)  566  0.17 0.00 0.17  KSU006_A02_BE497402Tu02P006E03E091F1_005.ab1      187   777 (3)  C KSU007_A02_BE497402Tu02P006E03E091R1_005.ab1   (0)   830   241 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  290 nodes

 147 str. conn. components

Path
    1    KSU006_A02_BE497402Tu02P006E03E091F1_005.ab1     1 
  460  C KSU007_A02_BE497402Tu02P006E03E091R1_005.ab1   557 
Contig length: old 1016, new 1016

Contig length: old 1016, new 1016
New start: 0