No. words: 715; after pruning: 689


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    

Pass: 3
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 4
             Gap  Score    
Merge:(0)    5   -3.6 -3.6 (1,1:206)  194  0.00 0.00 0.50  KSU012_A05_BE497446Ld01P006F03F091F1_047.ab1        6   204 (143)  C KSU013_A05_BE497446Ld01P006F03F091R1_047.ab1   (167)   201     4 *
  Worst pair: offset 1 
LLR breakdown: discreps: -5.4 (<20 part: 0.0 (#=0), >20:-5.4 (#=1); in HQ: -5.4, out HQ 0.0), match: 4.4  trail: -1.4  lead: -1.3  total: -3.7  194  0.00 0.00 0.50  KSU012_A05_BE497446Ld01P006F03F091F1_047.ab1        6   204 (143)  C KSU013_A05_BE497446Ld01P006F03F091R1_047.ab1   (167)   201     4 *

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-3.6       1        0

Gap   # merges  # failures
 size
 5       1        0

Offset
  1       1 

Read equivalence class histogram:
    1    2

Chimera merges: 


Contig 1:  98 nodes

 51 str. conn. components

Path
    1  C KSU013_A05_BE497446Ld01P006F03F091R1_047.ab1   368 
  247    KSU012_A05_BE497446Ld01P006F03F091F1_047.ab1    85 
  255  C KSU013_A05_BE497446Ld01P006F03F091R1_047.ab1   114 
  307    KSU012_A05_BE497446Ld01P006F03F091F1_047.ab1   145 
  315  C KSU013_A05_BE497446Ld01P006F03F091R1_047.ab1    54 
  331    KSU012_A05_BE497446Ld01P006F03F091F1_047.ab1   169 
Contig length: old 508, new 509

Contig length: old 509, new 509
New start: 0