No. words: 715; after pruning: 689


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    

Pass: 3
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 4
             Gap  Score    
Merge:(0)    5   -4.0 -4.0 (1,1:205)  189  0.00 0.51 0.51  KSU012_C05_BE497446Ld03P006F03F091F1_043.ab1        6   203 (170)  C KSU013_C05_BE497446Ld03P006F03F091R1_043.ab1   (141)   201     4 *
  Worst pair: offset 0 
LLR breakdown: discreps: -6.2 (<20 part: -0.8 (#=1), >20:-5.4 (#=1); in HQ: -6.2, out HQ 0.0), match: 4.4  trail: -1.3  lead: -0.9  total: -4.0  189  0.00 0.51 0.51  KSU012_C05_BE497446Ld03P006F03F091F1_043.ab1        6   203 (170)  C KSU013_C05_BE497446Ld03P006F03F091R1_043.ab1   (141)   201     4 *

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-4.0       1        0

Gap   # merges  # failures
 size
 5       1        0

Offset
  0       1 

Read equivalence class histogram:
    1    2

Chimera merges: 


Contig 1:  94 nodes

 49 str. conn. components

Path
    1  C KSU013_C05_BE497446Ld03P006F03F091R1_043.ab1   342 
  203    KSU012_C05_BE497446Ld03P006F03F091F1_043.ab1    66 
  207  C KSU013_C05_BE497446Ld03P006F03F091R1_043.ab1   136 
  219    KSU012_C05_BE497446Ld03P006F03F091F1_043.ab1    82 
  231  C KSU013_C05_BE497446Ld03P006F03F091R1_043.ab1   112 
  243    KSU012_C05_BE497446Ld03P006F03F091F1_043.ab1   106 
  247  C KSU013_C05_BE497446Ld03P006F03F091R1_043.ab1    96 
  263    KSU012_C05_BE497446Ld03P006F03F091F1_043.ab1   126 
  291  C KSU013_C05_BE497446Ld03P006F03F091R1_043.ab1    52 
  295    KSU012_C05_BE497446Ld03P006F03F091F1_043.ab1   158 
Contig length: old 509, new 510

Contig length: old 510, new 510
New start: 0