No. words: 713; after pruning: 687


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    6    0.0 0.0 (1,1:204)  183  0.00 0.51 1.02  KSU012_D05_BE497446Ld04P006F03F091F1_041.ab1        7   203 (169)  C KSU013_D05_BE497446Ld04P006F03F091R1_041.ab1   (142)   199     4 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 6       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    1    2

Chimera merges: 


Contig 1:  92 nodes

 48 str. conn. components

Path
    1  C KSU013_D05_BE497446Ld04P006F03F091R1_041.ab1   341 
  204    KSU012_D05_BE497446Ld04P006F03F091F1_041.ab1    67 
  208  C KSU013_D05_BE497446Ld04P006F03F091R1_041.ab1   134 
  216    KSU012_D05_BE497446Ld04P006F03F091F1_041.ab1    79 
  232  C KSU013_D05_BE497446Ld04P006F03F091R1_041.ab1   110 
  236    KSU012_D05_BE497446Ld04P006F03F091F1_041.ab1    99 
  240  C KSU013_D05_BE497446Ld04P006F03F091R1_041.ab1   102 
  260    KSU012_D05_BE497446Ld04P006F03F091F1_041.ab1   123 
  292  C KSU013_D05_BE497446Ld04P006F03F091R1_041.ab1    50 
  300    KSU012_D05_BE497446Ld04P006F03F091F1_041.ab1   163 
Contig length: old 508, new 509

Contig length: old 509, new 509
New start: 0