No. words: 729; after pruning: 703


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    

Pass: 3
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 4
             Gap  Score    
Merge:(0)    5   -4.6 -4.6 (1,1:205)  189  0.00 0.00 1.01  KSU012_F05_BE497446Ld06P006F03F091F1_037.ab1        6   204 (170)  C KSU013_F05_BE497446Ld06P006F03F091R1_037.ab1   (155)   200     4 *
  Worst pair: offset 0 
LLR breakdown: discreps: -6.4 (<20 part: -1.0 (#=1), >20:-5.4 (#=1); in HQ: -6.4, out HQ 0.0), match: 4.4  trail: -1.3  lead: -1.3  total: -4.6  189  0.00 0.00 1.01  KSU012_F05_BE497446Ld06P006F03F091F1_037.ab1        6   204 (170)  C KSU013_F05_BE497446Ld06P006F03F091R1_037.ab1   (155)   200     4 *

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-4.6       1        0

Gap   # merges  # failures
 size
 5       1        0

Offset
  0       1 

Read equivalence class histogram:
    1    2

Chimera merges: 


Contig 1:  94 nodes

 49 str. conn. components

Path
    1  C KSU013_F05_BE497446Ld06P006F03F091R1_037.ab1   355 
  199    KSU012_F05_BE497446Ld06P006F03F091F1_037.ab1    49 
  211  C KSU013_F05_BE497446Ld06P006F03F091R1_037.ab1   145 
  239    KSU012_F05_BE497446Ld06P006F03F091F1_037.ab1    89 
  247  C KSU013_F05_BE497446Ld06P006F03F091R1_037.ab1   109 
  275    KSU012_F05_BE497446Ld06P006F03F091F1_037.ab1   125 
  303  C KSU013_F05_BE497446Ld06P006F03F091R1_037.ab1    53 
  319    KSU012_F05_BE497446Ld06P006F03F091F1_037.ab1   169 
Contig length: old 523, new 524

Contig length: old 524, new 524
New start: 0