No. words: 714; after pruning: 688


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    

Pass: 3
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 4
             Gap  Score    
Merge:(0)    6   -0.2 -0.2 (1,1:204)  183  0.00 0.51 1.02  KSU012_G05_BE497446Ld07P006F03F091F1_035.ab1        7   203 (143)  C KSU013_G05_BE497446Ld07P006F03F091R1_035.ab1   (169)   199     4 *

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-0.2       1        0

Gap   # merges  # failures
 size
 6       1        0

Offset
  0       1 

Read equivalence class histogram:
    1    2

Chimera merges: 


Contig 1:  92 nodes

 48 str. conn. components

Path
    1  C KSU013_G05_BE497446Ld07P006F03F091R1_035.ab1   368 
  263    KSU012_G05_BE497446Ld07P006F03F091F1_035.ab1    99 
  267  C KSU013_G05_BE497446Ld07P006F03F091R1_035.ab1   102 
  271    KSU012_G05_BE497446Ld07P006F03F091F1_035.ab1   107 
  275  C KSU013_G05_BE497446Ld07P006F03F091R1_035.ab1    94 
  287    KSU012_G05_BE497446Ld07P006F03F091F1_035.ab1   123 
Contig length: old 509, new 510

Contig length: old 510, new 510
New start: 0