No. words: 712; after pruning: 686


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    5    0.0 1.3 (1,1:203)  188  0.00 0.51 0.51  KSU012_B06_BE497446Ld10P006F03F091F1_046.ab1        6   202 (170)  C KSU013_B06_BE497446Ld10P006F03F091R1_046.ab1   (141)   199     3 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 5       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  94 nodes

 49 str. conn. components

Path
    1  C KSU013_B06_BE497446Ld10P006F03F091R1_046.ab1   340 
  241    KSU012_B06_BE497446Ld10P006F03F091F1_046.ab1   104 
  257  C KSU013_B06_BE497446Ld10P006F03F091R1_046.ab1    84 
  265    KSU012_B06_BE497446Ld10P006F03F091F1_046.ab1   128 
  289  C KSU013_B06_BE497446Ld10P006F03F091R1_046.ab1    52 
  305    KSU012_B06_BE497446Ld10P006F03F091F1_046.ab1   168 
Contig length: old 508, new 509

Contig length: old 509, new 509
New start: 0