No. words: 716; after pruning: 690


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    

Pass: 3
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 4
             Gap  Score    
Merge:(0)    6   -2.9 -2.9 (1,1:205)  184  0.00 0.51 1.01  KSU012_C06_BE497446Ld11P006F03F091F1_044.ab1        7   204 (170)  C KSU013_C06_BE497446Ld11P006F03F091R1_044.ab1   (142)   200     4 *

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-2.9       1        0

Gap   # merges  # failures
 size
 6       1        0

Offset
  0       1 

Read equivalence class histogram:
    1    2

Chimera merges: 


Contig 1:  92 nodes

 48 str. conn. components

Path
    1  C KSU013_C06_BE497446Ld11P006F03F091R1_044.ab1   342 
  204    KSU012_C06_BE497446Ld11P006F03F091F1_044.ab1    67 
  208  C KSU013_C06_BE497446Ld11P006F03F091R1_044.ab1   135 
  216    KSU012_C06_BE497446Ld11P006F03F091F1_044.ab1    79 
  232  C KSU013_C06_BE497446Ld11P006F03F091R1_044.ab1   111 
  280    KSU012_C06_BE497446Ld11P006F03F091F1_044.ab1   143 
  292  C KSU013_C06_BE497446Ld11P006F03F091R1_044.ab1    51 
  296    KSU012_C06_BE497446Ld11P006F03F091F1_044.ab1   159 
Contig length: old 510, new 511

Contig length: old 511, new 511
New start: 0