No. words: 714; after pruning: 688


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    5    0.0 0.2 (1,1:204)  188  0.00 0.51 0.51  KSU012_E06_BE497446Ld13P006F03F091F1_040.ab1        6   202 (170)  C KSU013_E06_BE497446Ld13P006F03F091R1_040.ab1   (142)   200     4 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 5       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  96 nodes

 50 str. conn. components

Path
    1  C KSU013_E06_BE497446Ld13P006F03F091R1_040.ab1   342 
  204    KSU012_E06_BE497446Ld13P006F03F091F1_040.ab1    66 
  208  C KSU013_E06_BE497446Ld13P006F03F091R1_040.ab1   135 
  236    KSU012_E06_BE497446Ld13P006F03F091F1_040.ab1    98 
  248  C KSU013_E06_BE497446Ld13P006F03F091R1_040.ab1    95 
  296    KSU012_E06_BE497446Ld13P006F03F091F1_040.ab1   158 
Contig length: old 509, new 510

Contig length: old 510, new 510
New start: 0