No. words: 706; after pruning: 680


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    

Pass: 3
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 4
             Gap  Score    
Merge:(0)    5   -3.7 -3.7 (1,1:195)  178  0.00 0.52 1.04  KSU012_F06_BE497446Ld14P006F03F091F1_038.ab1        6   197 (176)  C KSU013_F06_BE497446Ld14P006F03F091R1_038.ab1   (142)   191     1 *
  Worst pair: offset 0 
LLR breakdown: discreps: -6.4 (<20 part: -1.0 (#=2), >20:-5.4 (#=1); in HQ: -6.4, out HQ 0.0), match: 4.2  lead: -1.6  total: -3.8  178  0.00 0.52 1.04  KSU012_F06_BE497446Ld14P006F03F091F1_038.ab1        6   197 (176)  C KSU013_F06_BE497446Ld14P006F03F091R1_038.ab1   (142)   191     1 *

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-3.7       1        0

Gap   # merges  # failures
 size
 5       1        0

Offset
  0       1 

Read equivalence class histogram:
    1    2

Chimera merges: 


Contig 1:  88 nodes

 46 str. conn. components

Path
    1  C KSU013_F06_BE497446Ld14P006F03F091R1_038.ab1   333 
  216    KSU012_F06_BE497446Ld14P006F03F091F1_038.ab1    78 
  232  C KSU013_F06_BE497446Ld14P006F03F091R1_038.ab1   102 
  236    KSU012_F06_BE497446Ld14P006F03F091F1_038.ab1    98 
  240  C KSU013_F06_BE497446Ld14P006F03F091R1_038.ab1    94 
  260    KSU012_F06_BE497446Ld14P006F03F091F1_038.ab1   122 
  292  C KSU013_F06_BE497446Ld14P006F03F091R1_038.ab1    42 
  304    KSU012_F06_BE497446Ld14P006F03F091F1_038.ab1   166 
Contig length: old 510, new 511

Contig length: old 511, new 511
New start: 0