No. words: 716; after pruning: 690


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    6    0.0 0.6 (1,1:205)  188  0.00 0.00 1.01  KSU012_G06_BE497446Ld15P006F03F091F1_036.ab1        7   204 (143)  C KSU013_G06_BE497446Ld15P006F03F091R1_036.ab1   (170)   199     4 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 6       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  96 nodes

 50 str. conn. components

Path
    1  C KSU013_G06_BE497446Ld15P006F03F091R1_036.ab1   369 
  262    KSU012_G06_BE497446Ld15P006F03F091F1_036.ab1    98 
  274  C KSU013_G06_BE497446Ld15P006F03F091R1_036.ab1    96 
  290    KSU012_G06_BE497446Ld15P006F03F091F1_036.ab1   126 
  298  C KSU013_G06_BE497446Ld15P006F03F091R1_036.ab1    72 
  326    KSU012_G06_BE497446Ld15P006F03F091F1_036.ab1   162 
Contig length: old 510, new 511

Contig length: old 511, new 511
New start: 0