No. words: 1490; after pruning: 1451


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      3

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 6.8 (1,1:314)  305  0.00 0.00 0.32  KSU045_D09_BE497618Ld01P006G03G091F2_073.ab1        1   315 (162)  C KSU046_D09_BE497618Ld01P006G03G091R2_073.ab1   (179)   314     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    1      1
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    1      1
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    1    1
    2    1

Chimera merges: 


Contig 2:  156 nodes

 80 str. conn. components

Path
    1  C KSU046_D09_BE497618Ld01P006G03G091R2_073.ab1   493 
  288    KSU045_D09_BE497618Ld01P006G03G091F2_073.ab1   110 
  292  C KSU046_D09_BE497618Ld01P006G03G091R2_073.ab1   202 
  388    KSU045_D09_BE497618Ld01P006G03G091F2_073.ab1   210 
  392  C KSU046_D09_BE497618Ld01P006G03G091R2_073.ab1   102 
  396    KSU045_D09_BE497618Ld01P006G03G091F2_073.ab1   218 
  404  C KSU046_D09_BE497618Ld01P006G03G091R2_073.ab1    90 
  428    KSU045_D09_BE497618Ld01P006G03G091F2_073.ab1   250 
Contig length: old 655, new 655

Contig 1:  2 nodes

 2 str. conn. components

Path
    1    KSU045_E05_BE497618Ld01P006G03G091F2_039.ab1     1 
Contig length: old 520, new 520

Contig length: old 655, new 655
New start: 0