No. words: 833; after pruning: 807


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
 -468  -315  0 48    103     E -102- 0
Fail: (1)  103    0.0 0.9 (1,1:315)  203  0.47 0.00 0.00  KSU004_A04_BE498699As01P006C04C101F1_021.ab1        1   213 (151)  C KSU005_A04_BE498699As01P006C04C101R1_021.ab1   (153)   316   104 *

Pass: 3
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       0        1

Gap   # merges  # failures
 size
103       0        1

Offset
  0       1 

Pass 4
             Gap  Score    
Merge:(0)  103    0.0 0.9 (1,1:315)  203  0.47 0.00 0.00  KSU004_A04_BE498699As01P006C04C101F1_021.ab1        1   213 (151)  C KSU005_A04_BE498699As01P006C04C101R1_021.ab1   (153)   316   104 *

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
103       1        0

Offset
  0       1 

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  106 nodes

 55 str. conn. components

Path
    1  C KSU005_A04_BE498699As01P006C04C101R1_021.ab1   469 
  221    KSU004_A04_BE498699As01P006C04C101F1_021.ab1    68 
  225  C KSU005_A04_BE498699As01P006C04C101R1_021.ab1   245 
  233    KSU004_A04_BE498699As01P006C04C101F1_021.ab1    80 
  241  C KSU005_A04_BE498699As01P006C04C101R1_021.ab1   229 
  245    KSU004_A04_BE498699As01P006C04C101F1_021.ab1    92 
  249  C KSU005_A04_BE498699As01P006C04C101R1_021.ab1   221 
  253    KSU004_A04_BE498699As01P006C04C101F1_021.ab1   100 
  277  C KSU005_A04_BE498699As01P006C04C101R1_021.ab1   193 
  281    KSU004_A04_BE498699As01P006C04C101F1_021.ab1   128 
  298  C KSU005_A04_BE498699As01P006C04C101R1_021.ab1   172 
  306    KSU004_A04_BE498699As01P006C04C101F1_021.ab1   153 
Contig length: old 517, new 517

Contig length: old 517, new 517
New start: 0