No. words: 1341; after pruning: 1315


Histogram of relative pair offsets, for read pairs with multiple alignments:
99     2

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 3.2 (1,1:376)  332  2.13 0.53 0.00  KSU049_B01_BE498699Ld02P006C04C101F1_013.ab1        1   376 (405)  C KSU049_B07_BE498699Ld02P006C04C101R1_061.ab1   (182)   378     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  170 nodes

 87 str. conn. components

Path
    1  C KSU049_B07_BE498699Ld02P006C04C101R1_061.ab1   560 
  313    KSU049_B01_BE498699Ld02P006C04C101F1_013.ab1   130 
  397  C KSU049_B07_BE498699Ld02P006C04C101R1_061.ab1   164 
  417    KSU049_B01_BE498699Ld02P006C04C101F1_013.ab1   234 
  484  C KSU049_B07_BE498699Ld02P006C04C101R1_061.ab1    77 
  496    KSU049_B01_BE498699Ld02P006C04C101F1_013.ab1   313 
  506  C KSU049_B07_BE498699Ld02P006C04C101R1_061.ab1    55 
  530    KSU049_B01_BE498699Ld02P006C04C101F1_013.ab1   347 
Contig length: old 964, new 964

Contig length: old 964, new 964
New start: 0