No. words: 1200; after pruning: 1174


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 8.1 (1,1:450)  426  0.00 0.22 0.44  KSU049_D01_BE498699Ld04P006C04C101F1_009.ab1        1   452 (128)  C KSU049_D07_BE498699Ld04P006C04C101R1_057.ab1   (169)   451     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  218 nodes

 111 str. conn. components

Path
    1  C KSU049_D07_BE498699Ld04P006C04C101R1_057.ab1   620 
  416    KSU049_D01_BE498699Ld04P006C04C101F1_009.ab1   246 
  432  C KSU049_D07_BE498699Ld04P006C04C101R1_057.ab1   189 
  500    KSU049_D01_BE498699Ld04P006C04C101F1_009.ab1   330 
  520  C KSU049_D07_BE498699Ld04P006C04C101R1_057.ab1   101 
  524    KSU049_D01_BE498699Ld04P006C04C101F1_009.ab1   354 
  540  C KSU049_D07_BE498699Ld04P006C04C101R1_057.ab1    81 
  556    KSU049_D01_BE498699Ld04P006C04C101F1_009.ab1   386 
  568  C KSU049_D07_BE498699Ld04P006C04C101R1_057.ab1    53 
  576    KSU049_D01_BE498699Ld04P006C04C101F1_009.ab1   406 
Contig length: old 749, new 750

Contig length: old 750, new 750
New start: 0