No. words: 1175; after pruning: 1149


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.1 (1,1:429)  405  0.00 0.23 0.46  KSU049_E01_BE498699Ld05P006C04C101F1_007.ab1        1   431 (137)  C KSU049_E07_BE498699Ld05P006C04C101R1_055.ab1   (177)   430     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  208 nodes

 106 str. conn. components

Path
    1  C KSU049_E07_BE498699Ld05P006C04C101R1_055.ab1   607 
  240    KSU049_E01_BE498699Ld05P006C04C101F1_007.ab1    62 
  248  C KSU049_E07_BE498699Ld05P006C04C101R1_055.ab1   360 
  308    KSU049_E01_BE498699Ld05P006C04C101F1_007.ab1   130 
  320  C KSU049_E07_BE498699Ld05P006C04C101R1_055.ab1   288 
  412    KSU049_E01_BE498699Ld05P006C04C101F1_007.ab1   234 
  428  C KSU049_E07_BE498699Ld05P006C04C101R1_055.ab1   180 
  496    KSU049_E01_BE498699Ld05P006C04C101F1_007.ab1   318 
  536  C KSU049_E07_BE498699Ld05P006C04C101R1_055.ab1    72 
  572    KSU049_E01_BE498699Ld05P006C04C101F1_007.ab1   394 
Contig length: old 745, new 746

Contig length: old 746, new 746
New start: 0