No. words: 1195; after pruning: 1169


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    4    0.0 6.2 (1,1:445)  418  0.00 0.23 0.23  KSU049_F01_BE498699Ld06P006C04C101F1_005.ab1        5   443 (135)  C KSU049_F07_BE498699Ld06P006C04C101R1_053.ab1   (175)   442     4 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 4       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  214 nodes

 109 str. conn. components

Path
    1  C KSU049_F07_BE498699Ld06P006C04C101R1_053.ab1   617 
  397    KSU049_F01_BE498699Ld06P006C04C101F1_005.ab1   225 
  405  C KSU049_F07_BE498699Ld06P006C04C101R1_053.ab1   213 
  421    KSU049_F01_BE498699Ld06P006C04C101F1_005.ab1   249 
  425  C KSU049_F07_BE498699Ld06P006C04C101R1_053.ab1   193 
  437    KSU049_F01_BE498699Ld06P006C04C101F1_005.ab1   265 
  445  C KSU049_F07_BE498699Ld06P006C04C101R1_053.ab1   173 
  497    KSU049_F01_BE498699Ld06P006C04C101F1_005.ab1   325 
Contig length: old 749, new 750

Contig length: old 750, new 750
New start: 0