No. words: 1199; after pruning: 1173


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 7.1 (1,1:442)  403  1.12 0.00 0.67  KSU049_G01_BE498699Ld07P006C04C101F1_003.ab1        1   445 (130)  C KSU049_G07_BE498699Ld07P006C04C101R1_051.ab1   (182)   442     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  202 nodes

 103 str. conn. components

Path
    1  C KSU049_G07_BE498699Ld07P006C04C101R1_051.ab1   624 
  374    KSU049_G01_BE498699Ld07P006C04C101F1_003.ab1   192 
  378  C KSU049_G07_BE498699Ld07P006C04C101R1_051.ab1   247 
  422    KSU049_G01_BE498699Ld07P006C04C101F1_003.ab1   240 
  434  C KSU049_G07_BE498699Ld07P006C04C101R1_051.ab1   191 
  530    KSU049_G01_BE498699Ld07P006C04C101F1_003.ab1   348 
Contig length: old 756, new 757

Contig length: old 757, new 757
New start: 0