No. words: 1192; after pruning: 1166


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    7    0.0 8.7 (1,1:443)  412  0.00 0.46 0.23  KSU049_H01_BE498699Ld08P006C04C101F1_001.ab1        1   437 (141)  C KSU049_H07_BE498699Ld08P006C04C101R1_049.ab1   (169)   445     8 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 7       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  210 nodes

 107 str. conn. components

Path
    1  C KSU049_H07_BE498699Ld08P006C04C101R1_049.ab1   614 
  400    KSU049_H01_BE498699Ld08P006C04C101F1_001.ab1   229 
  404  C KSU049_H07_BE498699Ld08P006C04C101R1_049.ab1   211 
  412    KSU049_H01_BE498699Ld08P006C04C101F1_001.ab1   241 
  428  C KSU049_H07_BE498699Ld08P006C04C101R1_049.ab1   187 
  452    KSU049_H01_BE498699Ld08P006C04C101F1_001.ab1   281 
  456  C KSU049_H07_BE498699Ld08P006C04C101R1_049.ab1   159 
  496    KSU049_H01_BE498699Ld08P006C04C101F1_001.ab1   325 
  536  C KSU049_H07_BE498699Ld08P006C04C101R1_049.ab1    79 
  564    KSU049_H01_BE498699Ld08P006C04C101F1_001.ab1   393 
Contig length: old 748, new 749

Contig length: old 749, new 749
New start: 0