No. words: 1182; after pruning: 1156


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.4 (1,1:428)  413  0.00 0.23 0.00  KSU049_B02_BE498699Ld10P006C04C101F1_014.ab1        1   429 (151)  C KSU049_B08_BE498699Ld10P006C04C101R1_062.ab1   (172)   430     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  214 nodes

 109 str. conn. components

Path
    1  C KSU049_B08_BE498699Ld10P006C04C101R1_062.ab1   602 
  283    KSU049_B02_BE498699Ld10P006C04C101F1_014.ab1   110 
  291  C KSU049_B08_BE498699Ld10P006C04C101R1_062.ab1   312 
  371    KSU049_B02_BE498699Ld10P006C04C101F1_014.ab1   198 
  375  C KSU049_B08_BE498699Ld10P006C04C101R1_062.ab1   228 
  423    KSU049_B02_BE498699Ld10P006C04C101F1_014.ab1   250 
  435  C KSU049_B08_BE498699Ld10P006C04C101R1_062.ab1   168 
  503    KSU049_B02_BE498699Ld10P006C04C101F1_014.ab1   330 
  543  C KSU049_B08_BE498699Ld10P006C04C101R1_062.ab1    60 
  571    KSU049_B02_BE498699Ld10P006C04C101F1_014.ab1   398 
Contig length: old 753, new 753

Contig length: old 753, new 753
New start: 0