No. words: 1199; after pruning: 1173


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 7.7 (1,1:449)  421  0.00 0.44 0.44  KSU049_D02_BE498699Ld12P006C04C101F1_010.ab1        1   451 (128)  C KSU049_D08_BE498699Ld12P006C04C101R1_058.ab1   (169)   451     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  214 nodes

 109 str. conn. components

Path
    1  C KSU049_D08_BE498699Ld12P006C04C101R1_058.ab1   620 
  364    KSU049_D02_BE498699Ld12P006C04C101F1_010.ab1   193 
  372  C KSU049_D08_BE498699Ld12P006C04C101R1_058.ab1   249 
  416    KSU049_D02_BE498699Ld12P006C04C101F1_010.ab1   245 
  424  C KSU049_D08_BE498699Ld12P006C04C101R1_058.ab1   197 
  500    KSU049_D02_BE498699Ld12P006C04C101F1_010.ab1   329 
  540  C KSU049_D08_BE498699Ld12P006C04C101R1_058.ab1    81 
  544    KSU049_D02_BE498699Ld12P006C04C101F1_010.ab1   373 
  568  C KSU049_D08_BE498699Ld12P006C04C101R1_058.ab1    53 
  580    KSU049_D02_BE498699Ld12P006C04C101F1_010.ab1   409 
Contig length: old 749, new 750

Contig length: old 750, new 750
New start: 0