No. words: 1196; after pruning: 1170


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    6    0.0 7.8 (1,1:445)  410  0.00 0.45 0.45  KSU049_E02_BE498699Ld13P006C04C101F1_008.ab1        1   440 (139)  C KSU049_E08_BE498699Ld13P006C04C101R1_056.ab1   (170)   447     8 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 6       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  206 nodes

 105 str. conn. components

Path
    1  C KSU049_E08_BE498699Ld13P006C04C101R1_056.ab1   617 
  241    KSU049_E02_BE498699Ld13P006C04C101F1_008.ab1    69 
  249  C KSU049_E08_BE498699Ld13P006C04C101R1_056.ab1   369 
  417    KSU049_E02_BE498699Ld13P006C04C101F1_008.ab1   245 
  429  C KSU049_E08_BE498699Ld13P006C04C101R1_056.ab1   189 
  453    KSU049_E02_BE498699Ld13P006C04C101F1_008.ab1   281 
  461  C KSU049_E08_BE498699Ld13P006C04C101R1_056.ab1   157 
  501    KSU049_E02_BE498699Ld13P006C04C101F1_008.ab1   329 
  541  C KSU049_E08_BE498699Ld13P006C04C101R1_056.ab1    77 
  545    KSU049_E02_BE498699Ld13P006C04C101F1_008.ab1   373 
  569  C KSU049_E08_BE498699Ld13P006C04C101R1_056.ab1    49 
  581    KSU049_E02_BE498699Ld13P006C04C101F1_008.ab1   409 
Contig length: old 750, new 751

Contig length: old 751, new 751
New start: 0