No. words: 1184; after pruning: 1158


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.0 (1,1:434)  405  0.00 0.69 0.23  KSU049_F02_BE498699Ld14P006C04C101F1_006.ab1        1   435 (143)  C KSU049_F08_BE498699Ld14P006C04C101R1_054.ab1   (169)   437     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  206 nodes

 105 str. conn. components

Path
    1  C KSU049_F08_BE498699Ld14P006C04C101R1_054.ab1   606 
  414    KSU049_F02_BE498699Ld14P006C04C101F1_006.ab1   242 
  430  C KSU049_F08_BE498699Ld14P006C04C101R1_054.ab1   177 
  466    KSU049_F02_BE498699Ld14P006C04C101F1_006.ab1   294 
  478  C KSU049_F08_BE498699Ld14P006C04C101R1_054.ab1   129 
  498    KSU049_F02_BE498699Ld14P006C04C101F1_006.ab1   326 
  510  C KSU049_F08_BE498699Ld14P006C04C101R1_054.ab1    97 
  526    KSU049_F02_BE498699Ld14P006C04C101F1_006.ab1   354 
  538  C KSU049_F08_BE498699Ld14P006C04C101R1_054.ab1    69 
  566    KSU049_F02_BE498699Ld14P006C04C101F1_006.ab1   394 
Contig length: old 749, new 750

Contig length: old 750, new 750
New start: 0