No. words: 1191; after pruning: 1165


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    5    0.0 8.9 (1,1:438)  416  0.00 0.00 0.23  KSU049_G02_BE498699Ld15P006C04C101F1_004.ab1        1   434 (142)  C KSU049_G08_BE498699Ld15P006C04C101R1_052.ab1   (177)   438     6 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 5       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  214 nodes

 109 str. conn. components

Path
    1  C KSU049_G08_BE498699Ld15P006C04C101R1_052.ab1   615 
  401    KSU049_G02_BE498699Ld15P006C04C101F1_004.ab1   224 
  405  C KSU049_G08_BE498699Ld15P006C04C101R1_052.ab1   211 
  413    KSU049_G02_BE498699Ld15P006C04C101F1_004.ab1   236 
  425  C KSU049_G08_BE498699Ld15P006C04C101R1_052.ab1   191 
  501    KSU049_G02_BE498699Ld15P006C04C101F1_004.ab1   324 
  529  C KSU049_G08_BE498699Ld15P006C04C101R1_052.ab1    87 
  533    KSU049_G02_BE498699Ld15P006C04C101F1_004.ab1   356 
  541  C KSU049_G08_BE498699Ld15P006C04C101R1_052.ab1    75 
  569    KSU049_G02_BE498699Ld15P006C04C101F1_004.ab1   392 
Contig length: old 752, new 753

Contig length: old 753, new 753
New start: 0