No. words: 1198; after pruning: 1172


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 7.5 (1,1:445)  416  0.00 0.45 0.45  KSU049_H02_BE498699Ld16P006C04C101F1_002.ab1        1   446 (136)  C KSU049_H08_BE498699Ld16P006C04C101R1_050.ab1   (169)   447     2 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  210 nodes

 107 str. conn. components

Path
    1  C KSU049_H08_BE498699Ld16P006C04C101R1_050.ab1   616 
  236    KSU049_H02_BE498699Ld16P006C04C101F1_002.ab1    65 
  248  C KSU049_H08_BE498699Ld16P006C04C101R1_050.ab1   369 
  384    KSU049_H02_BE498699Ld16P006C04C101F1_002.ab1   213 
  388  C KSU049_H08_BE498699Ld16P006C04C101R1_050.ab1   229 
  416    KSU049_H02_BE498699Ld16P006C04C101F1_002.ab1   245 
  432  C KSU049_H08_BE498699Ld16P006C04C101R1_050.ab1   185 
  440    KSU049_H02_BE498699Ld16P006C04C101F1_002.ab1   269 
  456  C KSU049_H08_BE498699Ld16P006C04C101R1_050.ab1   161 
  500    KSU049_H02_BE498699Ld16P006C04C101F1_002.ab1   329 
  520  C KSU049_H08_BE498699Ld16P006C04C101R1_050.ab1    97 
  528    KSU049_H02_BE498699Ld16P006C04C101F1_002.ab1   357 
  532  C KSU049_H08_BE498699Ld16P006C04C101R1_050.ab1    85 
  536    KSU049_H02_BE498699Ld16P006C04C101F1_002.ab1   365 
  540  C KSU049_H08_BE498699Ld16P006C04C101R1_050.ab1    77 
  568    KSU049_H02_BE498699Ld16P006C04C101F1_002.ab1   397 
Contig length: old 752, new 753

Contig length: old 753, new 753
New start: 0