No. words: 1572; after pruning: 1532


Histogram of relative pair offsets, for read pairs with multiple alignments:
57     4
99     2

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.8 (1,1:1128)  433  0.23 0.00 0.00  KSU008_F08_BE499509At01P009F03F091F1_063.ab1      311   753 (0)  C KSU009_F08_BE499509At01P009F03F091R1_063.ab1   (0)   819   377 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  222 nodes

 113 str. conn. components

Path
    1    KSU008_F08_BE499509At01P009F03F091F1_063.ab1     1 
  526  C KSU009_F08_BE499509At01P009F03F091R1_063.ab1   604 
  530    KSU008_F08_BE499509At01P009F03F091F1_063.ab1   530 
  534  C KSU009_F08_BE499509At01P009F03F091R1_063.ab1   596 
  538    KSU008_F08_BE499509At01P009F03F091F1_063.ab1   538 
  594  C KSU009_F08_BE499509At01P009F03F091R1_063.ab1   536 
  610    KSU008_F08_BE499509At01P009F03F091F1_063.ab1   610 
  618  C KSU009_F08_BE499509At01P009F03F091R1_063.ab1   512 
  638    KSU008_F08_BE499509At01P009F03F091F1_063.ab1   638 
  642  C KSU009_F08_BE499509At01P009F03F091R1_063.ab1   488 
Contig length: old 1129, new 1129

Contig length: old 1129, new 1129
New start: 0