No. words: 1537; after pruning: 1511


Histogram of relative pair offsets, for read pairs with multiple alignments:
58     4
99     2

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 8.9 (1,1:1134)  395  0.00 0.00 0.00  KSU008_E04_BE499509At02P009F03F091F1_023.ab1      355   756 (0)  C KSU009_E04_BE499509At02P009F03F091R1_023.ab1   (0)   781   380 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  202 nodes

 103 str. conn. components

Path
    1    KSU008_E04_BE499509At02P009F03F091F1_023.ab1     1 
  590  C KSU009_E04_BE499509At02P009F03F091R1_023.ab1   546 
  606    KSU008_E04_BE499509At02P009F03F091F1_023.ab1   606 
  630  C KSU009_E04_BE499509At02P009F03F091R1_023.ab1   506 
Contig length: old 1135, new 1135

Contig length: old 1135, new 1135
New start: 0