No. words: 1428; after pruning: 1402


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 14.6 (1,1:694)  660  0.14 0.00 0.14  KSU004_C04_BE499948As01P006E04E101F1_022.ab1        1   695 (19)  C KSU005_C04_BE499948As01P006E04E101R1_022.ab1   (20)   694     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  342 nodes

 173 str. conn. components

Path
    1  C KSU005_C04_BE499948As01P006E04E101R1_022.ab1   714 
   24    KSU004_C04_BE499948As01P006E04E101F1_022.ab1     4 
   41  C KSU005_C04_BE499948As01P006E04E101R1_022.ab1   675 
   45    KSU004_C04_BE499948As01P006E04E101F1_022.ab1    25 
  109  C KSU005_C04_BE499948As01P006E04E101R1_022.ab1   607 
  117    KSU004_C04_BE499948As01P006E04E101F1_022.ab1    97 
  121  C KSU005_C04_BE499948As01P006E04E101R1_022.ab1   595 
  129    KSU004_C04_BE499948As01P006E04E101F1_022.ab1   109 
  153  C KSU005_C04_BE499948As01P006E04E101R1_022.ab1   563 
  173    KSU004_C04_BE499948As01P006E04E101F1_022.ab1   153 
  185  C KSU005_C04_BE499948As01P006E04E101R1_022.ab1   531 
  189    KSU004_C04_BE499948As01P006E04E101F1_022.ab1   169 
  277  C KSU005_C04_BE499948As01P006E04E101R1_022.ab1   439 
  285    KSU004_C04_BE499948As01P006E04E101F1_022.ab1   265 
  293  C KSU005_C04_BE499948As01P006E04E101R1_022.ab1   423 
  301    KSU004_C04_BE499948As01P006E04E101F1_022.ab1   281 
  309  C KSU005_C04_BE499948As01P006E04E101R1_022.ab1   407 
  321    KSU004_C04_BE499948As01P006E04E101F1_022.ab1   301 
  325  C KSU005_C04_BE499948As01P006E04E101R1_022.ab1   391 
  385    KSU004_C04_BE499948As01P006E04E101F1_022.ab1   365 
  393  C KSU005_C04_BE499948As01P006E04E101R1_022.ab1   323 
  408    KSU004_C04_BE499948As01P006E04E101F1_022.ab1   388 
  416  C KSU005_C04_BE499948As01P006E04E101R1_022.ab1   300 
  424    KSU004_C04_BE499948As01P006E04E101F1_022.ab1   404 
  432  C KSU005_C04_BE499948As01P006E04E101R1_022.ab1   284 
  692    KSU004_C04_BE499948As01P006E04E101F1_022.ab1   672 
  696  C KSU005_C04_BE499948As01P006E04E101R1_022.ab1    20 
  704    KSU004_C04_BE499948As01P006E04E101F1_022.ab1   684 
Contig length: old 733, new 734

Contig length: old 734, new 734
New start: 0