No. words: 1572; after pruning: 1546


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    2    0.0 15.3 (1,1:775)  745  0.13 0.00 0.13  KSU002_C11_BE499948At02P006E04E101F1_082.ab1        1   774 (9)  C KSU003_C11_BE499948At02P006E04E101R1_082.ab1   (14)   775     3 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 2       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  382 nodes

 193 str. conn. components

Path
    1  C KSU003_C11_BE499948At02P006E04E101R1_082.ab1   789 
   18    KSU002_C11_BE499948At02P006E04E101F1_082.ab1     4 
   34  C KSU003_C11_BE499948At02P006E04E101R1_082.ab1   756 
   45    KSU002_C11_BE499948At02P006E04E101F1_082.ab1    31 
  149  C KSU003_C11_BE499948At02P006E04E101R1_082.ab1   641 
  161    KSU002_C11_BE499948At02P006E04E101F1_082.ab1   147 
  209  C KSU003_C11_BE499948At02P006E04E101R1_082.ab1   581 
  213    KSU002_C11_BE499948At02P006E04E101F1_082.ab1   199 
  249  C KSU003_C11_BE499948At02P006E04E101R1_082.ab1   541 
  253    KSU002_C11_BE499948At02P006E04E101F1_082.ab1   239 
  273  C KSU003_C11_BE499948At02P006E04E101R1_082.ab1   517 
  281    KSU002_C11_BE499948At02P006E04E101F1_082.ab1   267 
  373  C KSU003_C11_BE499948At02P006E04E101R1_082.ab1   417 
  429    KSU002_C11_BE499948At02P006E04E101F1_082.ab1   415 
  445  C KSU003_C11_BE499948At02P006E04E101R1_082.ab1   345 
  453    KSU002_C11_BE499948At02P006E04E101F1_082.ab1   439 
  461  C KSU003_C11_BE499948At02P006E04E101R1_082.ab1   329 
  783    KSU002_C11_BE499948At02P006E04E101F1_082.ab1   770 
Contig length: old 796, new 796

Contig length: old 796, new 797
New start: 0 
I Change at: 781; seg lengths: entry 1, contig 0