No. words: 1502; after pruning: 1476


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 14.4 (1,1:732)  627  0.00 0.00 0.00  KSU018_B05_BE499948Ld02P006E04E101F1_045.ab1        1   647 (0)  C KSU019_B05_BE499948Ld02P006E04E101R1_045.ab1   (122)   733    87 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  324 nodes

 164 str. conn. components

Path
    1  C KSU019_B05_BE499948Ld02P006E04E101R1_045.ab1   855 
  128    KSU018_B05_BE499948Ld02P006E04E101F1_045.ab1     6 
  132  C KSU019_B05_BE499948Ld02P006E04E101R1_045.ab1   724 
  152    KSU018_B05_BE499948Ld02P006E04E101F1_045.ab1    30 
  212  C KSU019_B05_BE499948Ld02P006E04E101R1_045.ab1   644 
  216    KSU018_B05_BE499948Ld02P006E04E101F1_045.ab1    94 
  252  C KSU019_B05_BE499948Ld02P006E04E101R1_045.ab1   604 
  264    KSU018_B05_BE499948Ld02P006E04E101F1_045.ab1   142 
  284  C KSU019_B05_BE499948Ld02P006E04E101R1_045.ab1   572 
  292    KSU018_B05_BE499948Ld02P006E04E101F1_045.ab1   170 
  300  C KSU019_B05_BE499948Ld02P006E04E101R1_045.ab1   556 
  304    KSU018_B05_BE499948Ld02P006E04E101F1_045.ab1   182 
  324  C KSU019_B05_BE499948Ld02P006E04E101R1_045.ab1   532 
  688    KSU018_B05_BE499948Ld02P006E04E101F1_045.ab1   566 
  716  C KSU019_B05_BE499948Ld02P006E04E101R1_045.ab1   140 
  732    KSU018_B05_BE499948Ld02P006E04E101F1_045.ab1   610 
  736  C KSU019_B05_BE499948Ld02P006E04E101R1_045.ab1   120 
Contig length: old 855, new 855

Contig length: old 855, new 855
New start: 0